PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009524.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 293aa    MW: 31475.6 Da    PI: 6.1731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009524.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15126172455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Do009524.1 126 DHIMAERKRREKINTRFVELSTVIPGL-----KKMDKATILSDATRYVKELQ 172
                 699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.025122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17126180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-19126180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-13126172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-17127176No hitNo description
SMARTSM003531.8E-16128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEDTSQFINW ATNPGAAADH EFSEAAFPSL QALREASHAA EMVQELIAGV HAPNSWSSDN  60
GDGAANNNLP ASWNFGATSA QQPGSNGMME APAASGLPDL VYEPPPTRRA GGLRSMGSMS  120
ASYAQDHIMA ERKRREKINT RFVELSTVIP GLKKMDKATI LSDATRYVKE LQEKLKDLEA  180
GGSGGRSIET RLVLVKRPYL HAAADDGSPL LSSASPGTPT AARKELPEIE VRFSEKSVMV  240
RVHCENSKGV AVKVLTEIEK LQLTIIHANV MPFLACSLII DITAKASFSS PFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERKRRE
2131136RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646677e-47AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986324.11e-155PREDICTED: transcription factor bHLH25-like
TrEMBLK4AIK91e-158K4AIK9_SETIT; Uncharacterized protein
STRINGSi038721m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-39bHLH family protein